WO2001056216A3 - Method, system and computer software for providing a genomic web portal - Google Patents

Method, system and computer software for providing a genomic web portal Download PDF

Info

Publication number
WO2001056216A3
WO2001056216A3 PCT/US2001/002316 US0102316W WO0156216A3 WO 2001056216 A3 WO2001056216 A3 WO 2001056216A3 US 0102316 W US0102316 W US 0102316W WO 0156216 A3 WO0156216 A3 WO 0156216A3
Authority
WO
WIPO (PCT)
Prior art keywords
user
probe
purchase
est
implementations
Prior art date
Application number
PCT/US2001/002316
Other languages
French (fr)
Other versions
WO2001056216A9 (en
WO2001056216A2 (en
Inventor
David M Craford
Vernon A Norviel
Original Assignee
Affymetrix Inc
David M Craford
Vernon A Norviel
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Affymetrix Inc, David M Craford, Vernon A Norviel filed Critical Affymetrix Inc
Priority to AU2001237965A priority Critical patent/AU2001237965A1/en
Priority to EP01910348A priority patent/EP1252513A4/en
Priority to CA002398382A priority patent/CA2398382A1/en
Priority to JP2001555252A priority patent/JP2003521057A/en
Publication of WO2001056216A2 publication Critical patent/WO2001056216A2/en
Publication of WO2001056216A3 publication Critical patent/WO2001056216A3/en
Priority to US10/063,559 priority patent/US20020183936A1/en
Priority to US10/197,621 priority patent/US20030097222A1/en
Publication of WO2001056216A9 publication Critical patent/WO2001056216A9/en
Priority to US10/903,344 priority patent/US20050009078A1/en
Priority to US10/903,641 priority patent/US20050004768A1/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/30—Microarray design
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression

Abstract

Systems, methods, and computer program products are described that process inquiries or orders regarding purchase of biological devices, substances, or related reagents. In some implementations, a user selects probe-set identifiers that identify microarray probe sets capable of enabling detection of biological molecules. Corresponding genes or EST's are identified and are correlated with related product data, which is provided to the user. Further, the user may select products for purchase based on the product data. If so, the user's account may be adjusted based on the purchase order. In the same or other implementations, a local genomic database is periodically updated. In response to a user selection of probe-set identifiers, data related to corresponding genes or EST's is provided to the user from the local genomic database.
PCT/US2001/002316 2000-01-25 2001-01-24 Method, system and computer software for providing a genomic web portal WO2001056216A2 (en)

Priority Applications (8)

Application Number Priority Date Filing Date Title
AU2001237965A AU2001237965A1 (en) 2000-01-25 2001-01-24 Method, system and computer software for providing a genomic web portal
EP01910348A EP1252513A4 (en) 2000-01-25 2001-01-24 Method, system and computer software for providing a genomic web portal
CA002398382A CA2398382A1 (en) 2000-01-25 2001-01-24 Method, system and computer software for providing a genomic web portal
JP2001555252A JP2003521057A (en) 2000-01-25 2001-01-24 Methods, systems and computer software for providing a genomic web portal
US10/063,559 US20020183936A1 (en) 2001-01-24 2002-05-02 Method, system, and computer software for providing a genomic web portal
US10/197,621 US20030097222A1 (en) 2000-01-25 2002-07-17 Method, system, and computer software for providing a genomic web portal
US10/903,344 US20050009078A1 (en) 2000-01-25 2004-07-30 Method, system, and computer software for providing a genomic web portal
US10/903,641 US20050004768A1 (en) 2000-01-25 2004-07-30 Method, system, and computer software for providing a genomic web portal

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US17807700P 2000-01-25 2000-01-25
US60/178,077 2000-01-25

Related Child Applications (2)

Application Number Title Priority Date Filing Date
US10/063,559 Continuation-In-Part US20020183936A1 (en) 2001-01-24 2002-05-02 Method, system, and computer software for providing a genomic web portal
US10/197,621 Continuation US20030097222A1 (en) 2000-01-25 2002-07-17 Method, system, and computer software for providing a genomic web portal

Publications (3)

Publication Number Publication Date
WO2001056216A2 WO2001056216A2 (en) 2001-08-02
WO2001056216A3 true WO2001056216A3 (en) 2002-03-07
WO2001056216A9 WO2001056216A9 (en) 2002-10-17

Family

ID=22651083

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2001/002316 WO2001056216A2 (en) 2000-01-25 2001-01-24 Method, system and computer software for providing a genomic web portal

Country Status (6)

Country Link
EP (1) EP1252513A4 (en)
JP (1) JP2003521057A (en)
CN (1) CN100350406C (en)
AU (1) AU2001237965A1 (en)
CA (1) CA2398382A1 (en)
WO (1) WO2001056216A2 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103907117A (en) * 2011-09-01 2014-07-02 基因组编译器公司 System for polynucleotide construct design, visualization and transactions to manufacture the same

Families Citing this family (42)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ES2288760T3 (en) 1996-04-25 2008-01-16 Bioarray Solutions Ltd. ELECTROCINETIC ASSEMBLY CONTROLLED BY LIGHT OF PARTICLES NEXT TO SURFACES.
US9709559B2 (en) 2000-06-21 2017-07-18 Bioarray Solutions, Ltd. Multianalyte molecular analysis using application-specific random particle arrays
US7262063B2 (en) 2001-06-21 2007-08-28 Bio Array Solutions, Ltd. Directed assembly of functional heterostructures
JP2003099624A (en) * 2001-09-25 2003-04-04 Toyo Kohan Co Ltd Dna providing system
EP2722395B1 (en) 2001-10-15 2018-12-19 Bioarray Solutions Ltd Multiplexed analysis of polymorphic loci by concurrent interrogation and enzyme-mediated detection
US20040018506A1 (en) 2002-01-25 2004-01-29 Koehler Ryan T. Methods for placing, accepting, and filling orders for products and services
WO2004047007A1 (en) 2002-11-15 2004-06-03 Bioarray Solutions, Ltd. Analysis, secure access to, and transmission of array images
JP3677275B2 (en) * 2003-06-12 2005-07-27 株式会社日立製作所 Information processing system using base sequence related information
ES2375962T3 (en) 2003-09-22 2012-03-07 Bioarray Solutions Ltd IMMOBILIZED SURFACE POLYELECTROLYTE WITH MULTIPLE FUNCTIONAL GROUPS ABLE TO JOIN COVALENTLY TO BIOMOLECULES.
JP4579525B2 (en) * 2003-10-27 2010-11-10 日立ソフトウエアエンジニアリング株式会社 Gene expression data management display method
EP1692298A4 (en) 2003-10-28 2008-08-13 Bioarray Solutions Ltd Optimization of gene expression analysis using immobilized capture probes
US7848889B2 (en) 2004-08-02 2010-12-07 Bioarray Solutions, Ltd. Automated analysis of multiplexed probe-target interaction patterns: pattern matching and allele identification
JP2007148752A (en) * 2005-11-28 2007-06-14 Canon Inc Automatic analysis device for target substance and determination software update method
US9445025B2 (en) 2006-01-27 2016-09-13 Affymetrix, Inc. System, method, and product for imaging probe arrays with small feature sizes
US8009889B2 (en) 2006-06-27 2011-08-30 Affymetrix, Inc. Feature intensity reconstruction of biological probe array
CN1932040B (en) * 2006-09-21 2010-06-09 武汉大学 Automatic fast detection system for family members of whole genome target gene
KR101289403B1 (en) 2011-04-27 2013-07-29 한국생명공학연구원 Method for construction of analyzing system for comparative evolutionary and functional studies of the Brassicacea genes
US9805407B2 (en) * 2013-01-25 2017-10-31 Illumina, Inc. Methods and systems for using a cloud computing environment to configure and sell a biological sample preparation cartridge and share related data
DK3030682T3 (en) 2013-08-05 2020-09-14 Twist Bioscience Corp DE NOVO SYNTHESIZED GENE LIBRARIES
US10669304B2 (en) 2015-02-04 2020-06-02 Twist Bioscience Corporation Methods and devices for de novo oligonucleic acid assembly
WO2016172377A1 (en) 2015-04-21 2016-10-27 Twist Bioscience Corporation Devices and methods for oligonucleic acid library synthesis
WO2017029249A1 (en) 2015-08-17 2017-02-23 Koninklijke Philips N.V. Multi-level architecture of pattern recognition in biological data
WO2017041016A1 (en) * 2015-09-03 2017-03-09 Becton, Dickinson And Company Methods and systems for providing labelled biomolecules
WO2017049231A1 (en) 2015-09-18 2017-03-23 Twist Bioscience Corporation Oligonucleic acid variant libraries and synthesis thereof
US11512347B2 (en) 2015-09-22 2022-11-29 Twist Bioscience Corporation Flexible substrates for nucleic acid synthesis
CA3006867A1 (en) 2015-12-01 2017-06-08 Twist Bioscience Corporation Functionalized surfaces and preparation thereof
EP3500672A4 (en) 2016-08-22 2020-05-20 Twist Bioscience Corporation De novo synthesized nucleic acid libraries
US10417457B2 (en) 2016-09-21 2019-09-17 Twist Bioscience Corporation Nucleic acid based data storage
EP3554514A4 (en) 2016-12-16 2020-08-05 Twist Bioscience Corporation Variant libraries of the immunological synapse and synthesis thereof
CN110326052A (en) * 2017-02-16 2019-10-11 贝克顿·迪金森公司 For providing the method and system of the biomolecule with epitope tag
EP3586255A4 (en) 2017-02-22 2021-03-31 Twist Bioscience Corporation Nucleic acid based data storage
WO2018170169A1 (en) 2017-03-15 2018-09-20 Twist Bioscience Corporation Variant libraries of the immunological synapse and synthesis thereof
WO2018231864A1 (en) 2017-06-12 2018-12-20 Twist Bioscience Corporation Methods for seamless nucleic acid assembly
AU2018284227A1 (en) 2017-06-12 2020-01-30 Twist Bioscience Corporation Methods for seamless nucleic acid assembly
KR20200047706A (en) 2017-09-11 2020-05-07 트위스트 바이오사이언스 코포레이션 GPCR binding protein and method for synthesis thereof
SG11202003574TA (en) 2017-10-20 2020-05-28 Twist Bioscience Corp Heated nanowells for polynucleotide synthesis
CA3088911A1 (en) 2018-01-04 2019-07-11 Twist Bioscience Corporation Dna-based digital information storage
WO2019222706A1 (en) 2018-05-18 2019-11-21 Twist Bioscience Corporation Polynucleotides, reagents, and methods for nucleic acid hybridization
US11492727B2 (en) 2019-02-26 2022-11-08 Twist Bioscience Corporation Variant nucleic acid libraries for GLP1 receptor
WO2020176680A1 (en) 2019-02-26 2020-09-03 Twist Bioscience Corporation Variant nucleic acid libraries for antibody optimization
CN114729342A (en) 2019-06-21 2022-07-08 特韦斯特生物科学公司 Barcode-based nucleic acid sequence assembly
CN115240769B (en) * 2022-07-25 2023-12-29 纳昂达(南京)生物科技有限公司 Probe design interaction system based on Internet

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5630125A (en) * 1994-05-23 1997-05-13 Zellweger; Paul Method and apparatus for information management using an open hierarchical data structure
EP1043667A2 (en) * 1999-03-18 2000-10-11 Saischek, Jörn Online service for the efficient establishment of contacts between sellers and buyers of chemical products
US6188783B1 (en) * 1997-07-25 2001-02-13 Affymetrix, Inc. Method and system for providing a probe array chip design database

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU4696399A (en) * 1998-06-22 2000-01-10 Regents Of The University Of California, The Composition and methods for evaluating an organism's response to alcohol

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5630125A (en) * 1994-05-23 1997-05-13 Zellweger; Paul Method and apparatus for information management using an open hierarchical data structure
US6188783B1 (en) * 1997-07-25 2001-02-13 Affymetrix, Inc. Method and system for providing a probe array chip design database
EP1043667A2 (en) * 1999-03-18 2000-10-11 Saischek, Jörn Online service for the efficient establishment of contacts between sellers and buyers of chemical products

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
HOQUE R.: "A shopping cart application with javascript", WEBTECHNIQUES, vol. 3, no. 5, May 1998 (1998-05-01), pages 63 - 68, XP002944913 *
LIPSHUTZ R.J. ET AL.: "High density synthetic oligonucleotide arrays", NATURE GENETICS SUPPLEMENT, vol. 21, January 1999 (1999-01-01), pages 20 - 24, XP002944916 *
THAYER A.M.: "Bioinformatics for the masses", BUSINESS, vol. 78, no. 6, 7 February 2000 (2000-02-07), pages 19 - 32, XP002944915 *
WALDROP M.M.: "On-line archives let biologists interrogate the genome", SCIENCE, vol. 269, 8 September 1995 (1995-09-08), pages 1356 - 1358, XP002944914 *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN103907117A (en) * 2011-09-01 2014-07-02 基因组编译器公司 System for polynucleotide construct design, visualization and transactions to manufacture the same

Also Published As

Publication number Publication date
EP1252513A2 (en) 2002-10-30
JP2003521057A (en) 2003-07-08
AU2001237965A1 (en) 2001-08-07
CA2398382A1 (en) 2001-08-02
WO2001056216A9 (en) 2002-10-17
EP1252513A4 (en) 2007-07-18
CN1426534A (en) 2003-06-25
CN100350406C (en) 2007-11-21
WO2001056216A2 (en) 2001-08-02

Similar Documents

Publication Publication Date Title
WO2001056216A3 (en) Method, system and computer software for providing a genomic web portal
Catoni et al. DMRcaller: a versatile R/Bioconductor package for detection and visualization of differentially methylated regions in CpG and non-CpG contexts
Thomas et al. Applications for protein sequence–function evolution data: mRNA/protein expression analysis and coding SNP scoring tools
Thiel et al. SNP2CAPS: a SNP and INDEL analysis tool for CAPS marker development
WO2002077895A3 (en) Method for epigenetic feature selection
WO2005036306A3 (en) Content aggregation method and apparatus for on-line purchasing system
Lucek et al. Multi-locus nonparametric linkage analysis of complex trait loci with neural networks
WO1999022323A3 (en) Systems and methods for software evaluation and performance measurement
IL129728A0 (en) System method and computer program product for the visualization and interactive processing and analysis of chemical data
WO2005119651A3 (en) Media usage monitoring and measurement system and method
WO1998032289A3 (en) Method and apparatus for accessing on-line stores
WO2004010264A3 (en) Marketing analysis and planning system and method
Thodberg et al. Comprehensive profiling of the fission yeast transcription start site activity during stress and media response
SE0200949D0 (en) Method and system for curve quality control
Hanawalt et al. Genomic heterogeneity of DNA repair. Role in aging?
WO2005072365A3 (en) Method and apparatus for determining material breakdown and product compliance
Dudnikov Allozyme variation in Transcaucasian populations of Aegilops squarrosa
Bengert et al. A software tool-box for analysis of regulatory RNA elements
WO2003033128A3 (en) Methods for image analysis of high-density synthetic dna microarrays
JP2003162639A (en) Stock name selection supporting device
Connelly et al. Absence of MeCP2 binding to non-methylated GT-rich sequences in vivo
Julienne et al. JASS: command line and web interface for the joint analysis of GWAS results
Bolshoy et al. Enhancement of the nucleosomal pattern in sequences of lower complexity
EP1306322A4 (en) Damage status analysis method, damage status analysis system, damage status input terminal, recording medium and computer program product
Birkett et al. Chlorate resistance and nitrate assimilation in industrial strains of Penicillium chrysogenum

Legal Events

Date Code Title Description
AK Designated states

Kind code of ref document: A2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

121 Ep: the epo has been informed by wipo that ep was designated in this application
DFPE Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101)
AK Designated states

Kind code of ref document: A3

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: A3

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

WWE Wipo information: entry into national phase

Ref document number: 10197621

Country of ref document: US

WWE Wipo information: entry into national phase

Ref document number: 2001910348

Country of ref document: EP

ENP Entry into the national phase

Ref document number: 2001 555252

Country of ref document: JP

Kind code of ref document: A

WWE Wipo information: entry into national phase

Ref document number: 2398382

Country of ref document: CA

Ref document number: IN/PCT/2002/1128/CHE

Country of ref document: IN

WWE Wipo information: entry into national phase

Ref document number: 018041396

Country of ref document: CN

AK Designated states

Kind code of ref document: C2

Designated state(s): AE AG AL AM AT AU AZ BA BB BG BR BY BZ CA CH CN CR CU CZ DE DK DM DZ EE ES FI GB GD GE GH GM HR HU ID IL IN IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MA MD MG MK MN MW MX MZ NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT TZ UA UG US UZ VN YU ZA ZW

AL Designated countries for regional patents

Kind code of ref document: C2

Designated state(s): GH GM KE LS MW MZ SD SL SZ TZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE TR BF BJ CF CG CI CM GA GN GW ML MR NE SN TD TG

COP Corrected version of pamphlet

Free format text: PAGES 1/11-11/11, DRAWINGS, REPLACED BY NEW PAGES 1/11-11/11; DUE TO LATE TRANSMITTAL BY THE RECEIVING OFFICE

WWP Wipo information: published in national office

Ref document number: 2001910348

Country of ref document: EP

REG Reference to national code

Ref country code: DE

Ref legal event code: 8642